CFAP298-TCP10L CFAP298-TCP10L readthrough [Homo sapiens (human)] - Gene

Summary

Official Symbol: CFAP298-TCP10Lprovided by HGNC
Official Full Name: CFAP298-TCP10L readthroughprovided by HGNC
Primary source: HGNC:HGNC:54636
See related: Ensembl:ENSG00000265590 AllianceGenome:HGNC:54636
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: C21orf77; LINC00846; C21orf59-TCP10L
Summary: This locus represents naturally occurring readthrough transcription between the neighboring chromosome 21 open reading frame 59 (C21orf59) and TCP10L (t-complex 10 like) genes on chromosome 21. Readthrough transcripts may encode a fusion protein that shares sequence identity with each individual gene product. [provided by RefSeq, Apr 2017]
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Genomic context

Location:: 21q22.11

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2023_10	current	GRCh38.p14 (GCF_000001405.40)	21	NC_000021.9 (32563492..32612377, complement)
RS_2023_10	current	T2T-CHM13v2.0 (GCF_009914755.1)	21	NC_060945.1 (30923998..30978378, complement)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	21	NC_000021.8 (33935802..33984687, complement)

Chromosome 21 - NC_000021.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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General protein information

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Preferred Names: uncharacterized protein LOC110091775

Names: C21orf59-TCP10L readthrough; long intergenic non-protein coding RNA 846

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001350338.2 → NP_001337267.1 uncharacterized protein LOC110091775

Status: VALIDATED

Description

Transcript Variant: This variant (1) encodes a protein with similarity to the proteins encoded by C21orf59 and TCP10L.

Source sequence(s)

AP000274, AP000275

UniProtKB/TrEMBL

A0A5F9ZHZ7, A0A669KAY3

Related

ENSP00000501088.1, ENST00000673807.1

Conserved Domains (1) summary

pfam11069
Location:189 → 219

DUF2870; Protein of unknown function (DUF2870)

RNA

NR_146638.2 RNA Sequence

Status: VALIDATED

Source sequence(s)

AP000274, AP000275
NR_146639.2 RNA Sequence

Status: VALIDATED

Source sequence(s)

AP000274, AP000275