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Mcf2 mcf.2 transforming sequence [ Mus musculus (house mouse) ]

Gene ID: 109904, updated on 5-Mar-2024

Summary

Official Symbol
Mcf2provided by MGI
Official Full Name
mcf.2 transforming sequenceprovided by MGI
Primary source
MGI:MGI:96932
See related
Ensembl:ENSMUSG00000031139 AllianceGenome:MGI:96932
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Dbl; Mcf-2; B230117G22Rik
Summary
Enables guanyl-nucleotide exchange factor activity. Acts upstream of or within cellular response to leukemia inhibitory factor and dendrite development. Is expressed in femur; fibula; and tibia. Orthologous to human MCF2 (MCF.2 cell line derived transforming sequence). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in cerebellum adult (RPKM 1.2), cortex adult (RPKM 0.7) and 9 other tissues See more
Orthologs
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Genomic context

See Mcf2 in Genome Data Viewer
Location:
X A6; X 33.5 cM
Exon count:
31
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (59101316..59224546, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (60055956..60179184, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene coagulation factor IX Neighboring gene predicted pseudogene 5637 Neighboring gene STARR-seq mESC enhancer starr_47238 Neighboring gene STARR-seq mESC enhancer starr_47239 Neighboring gene STARR-seq mESC enhancer starr_47240 Neighboring gene ATPase, class VI, type 11C Neighboring gene STARR-seq mESC enhancer starr_47242 Neighboring gene predicted gene, 22287 Neighboring gene microRNA 505

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1)  1 citation
  • Endonuclease-mediated (1) 

Pathways from PubChem

General gene information

Markers

Clone Names

  • MGC159138

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables guanyl-nucleotide exchange factor activity IDA
Inferred from Direct Assay
more info
PubMed 
enables guanyl-nucleotide exchange factor activity TAS
Traceable Author Statement
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to leukemia inhibitory factor IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in dendrite development IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within dendrite development IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in extrinsic component of membrane IBA
Inferred from Biological aspect of Ancestor
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001289730.2NP_001276659.1  proto-oncogene DBL isoform 3

    Status: VALIDATED

    Source sequence(s)
    AK032122, AK045424, AL670778, AL671984
    Consensus CDS
    CCDS81129.1
    UniProtKB/TrEMBL
    A2AET8, Q7TNJ5
    Related
    ENSMUSP00000033478.5, ENSMUST00000033478.5
    Conserved Domains (5) summary
    cd00160
    Location:511688
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    pfam00169
    Location:727823
    PH; PH domain
    cl02488
    Location:225416
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl15787
    Location:2085
    SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
    cl17171
    Location:695826
    PH-like; Pleckstrin homology-like domain
  2. NM_001289731.2NP_001276660.1  proto-oncogene DBL isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL670778, AL671984, AL929279
    Consensus CDS
    CCDS72384.1
    UniProtKB/TrEMBL
    A2AEU1, Q8BLE2
    Related
    ENSMUSP00000067075.5, ENSMUST00000063507.11
    Conserved Domains (5) summary
    smart00516
    Location:128268
    SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
    cd00160
    Location:678855
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    pfam00169
    Location:877990
    PH; PH domain
    cl02488
    Location:408599
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl17171
    Location:862993
    PH-like; Pleckstrin homology-like domain
  3. NM_001358998.1NP_001345927.1  proto-oncogene DBL isoform 4

    Status: VALIDATED

    Source sequence(s)
    AL670778, AL671984, AL929279
    UniProtKB/TrEMBL
    Q7TNJ5
    Conserved Domains (4) summary
    cd00160
    Location:472649
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    pfam13716
    Location:1973
    CRAL_TRIO_2; Divergent CRAL/TRIO domain
    cl02488
    Location:186377
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl17171
    Location:656787
    PH-like; Pleckstrin homology-like domain
  4. NM_001358999.1NP_001345928.1  proto-oncogene DBL isoform 5

    Status: VALIDATED

    Source sequence(s)
    AL670778, AL671984, AL929279
    UniProtKB/TrEMBL
    Q99N72
    Conserved Domains (4) summary
    cd00160
    Location:456633
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    pfam13716
    Location:1973
    CRAL_TRIO_2; Divergent CRAL/TRIO domain
    cl02488
    Location:186377
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl17171
    Location:640771
    PH-like; Pleckstrin homology-like domain
  5. NM_001359000.1NP_001345929.1  proto-oncogene DBL isoform 6

    Status: VALIDATED

    Source sequence(s)
    AL670778, AL671984, AL929279
    UniProtKB/TrEMBL
    Q99N72
    Conserved Domains (4) summary
    cd00160
    Location:455632
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cl02488
    Location:219376
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl15787
    Location:2085
    SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
    cl17171
    Location:639770
    PH-like; Pleckstrin homology-like domain
  6. NM_001359001.1NP_001345930.1  proto-oncogene DBL isoform 7

    Status: VALIDATED

    Source sequence(s)
    AL670778, AL671984, AL929279
    UniProtKB/TrEMBL
    Q99N72
    Conserved Domains (4) summary
    cd00160
    Location:416593
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    pfam13716
    Location:1973
    CRAL_TRIO_2; Divergent CRAL/TRIO domain
    cl02488
    Location:180337
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl17171
    Location:600731
    PH-like; Pleckstrin homology-like domain
  7. NM_133197.5NP_573460.2  proto-oncogene DBL isoform 2

    See identical proteins and their annotated locations for NP_573460.2

    Status: VALIDATED

    Source sequence(s)
    AK032122, AK045424, AL670778, AL671984
    Consensus CDS
    CCDS30160.1
    UniProtKB/TrEMBL
    Q8C067, Q99N72
    Related
    ENSMUSP00000099070.4, ENSMUST00000101531.10
    Conserved Domains (5) summary
    cd00160
    Location:495672
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    pfam00169
    Location:711807
    PH; PH domain
    cl02488
    Location:225416
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl15787
    Location:2085
    SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
    cl17171
    Location:679810
    PH-like; Pleckstrin homology-like domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    59101316..59224546 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030251191.2XP_030107051.1  proto-oncogene DBL isoform X7

    UniProtKB/TrEMBL
    A2AEU1, Q8BLE2
    Conserved Domains (4) summary
    cd00160
    Location:615792
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cl02488
    Location:363520
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl15787
    Location:128239
    SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
    cl17171
    Location:799930
    PH-like; Pleckstrin homology-like domain
  2. XM_030251192.2XP_030107052.1  proto-oncogene DBL isoform X8

    UniProtKB/TrEMBL
    A2AEU1, Q8BLE2
    Conserved Domains (4) summary
    cd00160
    Location:599776
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cl02488
    Location:363520
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl15787
    Location:128239
    SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
    cl17171
    Location:783914
    PH-like; Pleckstrin homology-like domain
  3. XM_006527743.4XP_006527806.1  proto-oncogene DBL isoform X5

    UniProtKB/TrEMBL
    A2AEU1, Q8BLE2
    Conserved Domains (4) summary
    cd00160
    Location:639816
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cl02488
    Location:369560
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl15787
    Location:128239
    SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
    cl17171
    Location:823954
    PH-like; Pleckstrin homology-like domain
  4. XM_017318343.2XP_017173832.1  proto-oncogene DBL isoform X2

    UniProtKB/TrEMBL
    A2AEU1, Q8BLE2
    Conserved Domains (4) summary
    cd00160
    Location:655832
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cl02488
    Location:369560
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl15787
    Location:128239
    SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
    cl17171
    Location:839970
    PH-like; Pleckstrin homology-like domain
  5. XM_017318345.2XP_017173834.1  proto-oncogene DBL isoform X6

    UniProtKB/TrEMBL
    A2AEU1, Q8BLE2
    Conserved Domains (4) summary
    smart00516
    Location:128268
    SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
    cd00160
    Location:638815
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cl02488
    Location:402559
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl17171
    Location:822953
    PH-like; Pleckstrin homology-like domain
  6. XM_017318344.2XP_017173833.1  proto-oncogene DBL isoform X3

    UniProtKB/TrEMBL
    A2AEU1, Q8BLE2
    Conserved Domains (4) summary
    smart00516
    Location:128268
    SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
    cd00160
    Location:654831
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cl02488
    Location:402559
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl17171
    Location:838969
    PH-like; Pleckstrin homology-like domain
  7. XM_036161775.1XP_036017668.1  proto-oncogene DBL isoform X4

    UniProtKB/TrEMBL
    A2AEU1, Q8BLE2
    Conserved Domains (4) summary
    smart00516
    Location:128268
    SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
    cd00160
    Location:694841
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cl02488
    Location:408599
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl17171
    Location:833967
    PH-like; Pleckstrin homology-like domain
  8. XM_006527750.4XP_006527813.1  proto-oncogene DBL isoform X1

    UniProtKB/TrEMBL
    A2AEU1, Q8BLE2
    Conserved Domains (4) summary
    smart00516
    Location:128268
    SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
    cd00160
    Location:694871
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cl02488
    Location:408599
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl17171
    Location:8781009
    PH-like; Pleckstrin homology-like domain
  9. XM_036161777.1XP_036017670.1  proto-oncogene DBL isoform X11

    UniProtKB/TrEMBL
    Q99N72
    Conserved Domains (3) summary
    cd00160
    Location:456603
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cl02488
    Location:186377
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl17171
    Location:595729
    PH-like; Pleckstrin homology-like domain
  10. XM_017318347.2XP_017173836.1  proto-oncogene DBL isoform X9

    UniProtKB/TrEMBL
    Q7TNJ5
    Conserved Domains (4) summary
    cd00160
    Location:471648
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cl02488
    Location:219376
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl15787
    Location:2085
    SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
    cl17171
    Location:655786
    PH-like; Pleckstrin homology-like domain
  11. XM_036161776.1XP_036017669.1  proto-oncogene DBL isoform X10

    UniProtKB/TrEMBL
    Q99N72
    Conserved Domains (4) summary
    cd00160
    Location:495642
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cl02488
    Location:225416
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl15787
    Location:2085
    SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
    cl17171
    Location:634768
    PH-like; Pleckstrin homology-like domain

RNA

  1. XR_004940317.1 RNA Sequence