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MTCYBP40 MT-CYB pseudogene 40 [ Homo sapiens (human) ]

Gene ID: 109729144, updated on 10-Oct-2023

Summary

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Official Symbol
MTCYBP40provided by HGNC
Official Full Name
MT-CYB pseudogene 40provided by HGNC
Primary source
HGNC:HGNC:52308
See related
Ensembl:ENSG00000248931 AllianceGenome:HGNC:52308
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
5q15
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (97677547..97678681, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (98178614..98179748, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (97013251..97014385, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5) pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr5:96844479-96845210 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:96855347-96855880 Neighboring gene long intergenic non-protein coding RNA 1340 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22834 Neighboring gene zinc finger DHHC-type palmitoyltransferase 3 pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:97190106-97190606 Neighboring gene long intergenic non-protein coding RNA 2234

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • mitochondrially encoded cytochrome b pseudogene 40

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_052931.1 

    Range
    101..1235
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    97677547..97678681 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    98178614..98179748 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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