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SNORD3E small nucleolar RNA, C/D box 3E [ Homo sapiens (human) ]

Gene ID: 109617015, updated on 10-Oct-2023

Summary

Official Symbol
SNORD3Eprovided by HGNC
Official Full Name
small nucleolar RNA, C/D box 3Eprovided by HGNC
Primary source
HGNC:HGNC:52238
See related
Ensembl:ENSG00000280704 AllianceGenome:HGNC:52238
Gene type
snoRNA
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See SNORD3E in Genome Data Viewer
Location:
Xq13.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (70846081..70846295, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (69279412..69279623, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (70065931..70066145, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chrX:69674628-69675054 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20893 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chrX:69696945-69697843 Neighboring gene DLG3 antisense RNA 1 Neighboring gene NANOG hESC enhancer GRCh37_chrX:69699902-69700403 Neighboring gene discs large MAGUK scaffold protein 3 Neighboring gene NANOG hESC enhancer GRCh37_chrX:69728146-69728708 Neighboring gene testis expressed 11 Neighboring gene small integral membrane protein 30-like Neighboring gene WASHC3 pseudogene 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:70150189-70150690 Neighboring gene solute carrier family 7 member 3

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_145758.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AL627390
    Related
    ENST00000627253.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    70846081..70846295 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    69279412..69279623 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)