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SNORA50B small nucleolar RNA, H/ACA box 50B [ Homo sapiens (human) ]

Gene ID: 109616998, updated on 10-Oct-2023

Summary

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Official Symbol
SNORA50Bprovided by HGNC
Official Full Name
small nucleolar RNA, H/ACA box 50Bprovided by HGNC
Primary source
HGNC:HGNC:50432
See related
Ensembl:ENSG00000253007 AllianceGenome:HGNC:50432
Gene type
snoRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
22q12.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (33704786..33704920, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (34162229..34162363, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (34100772..34100906, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene LARGE xylosyl- and glucuronyltransferase 1 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr22:33833834-33835033 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18882 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18883 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18884 Neighboring gene microRNA 4764 Neighboring gene MPRA-validated peak4484 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18885 Neighboring gene Sharpr-MPRA regulatory region 960 Neighboring gene uncharacterized LOC105373007 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13645 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:34018247-34018422 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:34118270-34118798 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:34134097-34134616 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:34134617-34135136 Neighboring gene LARGE antisense RNA 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:34175765-34176266 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:34178675-34179175 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13646 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr22:34231147-34231704 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18886 Neighboring gene Sharpr-MPRA regulatory region 672 Neighboring gene Sharpr-MPRA regulatory region 8125 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:34245227-34245862 Neighboring gene H3K27ac hESC enhancers GRCh37_chr22:34249333-34249834 and GRCh37_chr22:34249835-34250334 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:34263445-34263944 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:34265034-34265534 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:34265535-34266035 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:34271643-34272142 Neighboring gene Sharpr-MPRA regulatory region 329 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:34294924-34295536 Neighboring gene Sharpr-MPRA regulatory region 1840 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13648 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13649 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13650 Neighboring gene LARGE1 antisense RNA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An updated human snoRNAome. Jorjani H, et al. Nucleic Acids Res, 2016 Jun 20. PMID 27174936, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_145833.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    Z69713
    Related
    ENST00000517198.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    33704786..33704920 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    34162229..34162363 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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