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ARHGAP27P1-BPTFP1-KPNA2P3 ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene [ Homo sapiens (human) ]

Gene ID: 109286553, updated on 10-Oct-2023

Summary

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Official Symbol
ARHGAP27P1-BPTFP1-KPNA2P3provided by HGNC
Official Full Name
ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:52873
See related
Ensembl:ENSG00000215769 AllianceGenome:HGNC:52873
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents naturally-occurring readthrough transcription between multiple unprocessed pseudogene loci. Readthrough transcripts likely do not encode functional proteins. [provided by RefSeq, Dec 2016]
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Genomic context

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Location:
17q24.1
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (64749662..64781999, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (65619415..65651752, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (62745780..62778117, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene SMAD specific E3 ubiquitin protein ligase 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8844 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8845 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8846 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:62658719-62659277 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr17:62702502-62703701 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12600 Neighboring gene U5 small nuclear ribonucleoprotein 200 kDa helicase-like Neighboring gene MICOS10 pseudogene 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:62755217-62755429 Neighboring gene karyopherin subunit alpha 2 pseudogene 3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:62773916-62774585 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:62774586-62775254 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8849 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8850 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:62781097-62781856 Neighboring gene bromodomain PHD finger transcription factor pseudogene 1 Neighboring gene Rho GTPase activating protein 27 pseudogene 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr17:62782294-62783493 Neighboring gene pleckstrin homology and RUN domain containing M1 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:62794173-62794673 Neighboring gene microRNA 6080 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:62817908-62818408 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:62821718-62822218 Neighboring gene microRNA 4315-2 Neighboring gene RNA, U7 small nuclear 115 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Clone Names

  • FLJ30780

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026899.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK055342, BU608263, DB093141
    Related
    ENST00000578492.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    64749662..64781999 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    65619415..65651752 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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