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BPTFP1 bromodomain PHD finger transcription factor pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 109286551, updated on 10-Oct-2023

Summary

Official Symbol
BPTFP1provided by HGNC
Official Full Name
bromodomain PHD finger transcription factor pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:52869
See related
Ensembl:ENSG00000263647 AllianceGenome:HGNC:52869
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

Location:
17q24.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (64761914..64762712, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (65631666..65632464, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (62758032..62758830, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene Neighboring gene U5 small nuclear ribonucleoprotein 200 kDa helicase-like Neighboring gene MICOS10 pseudogene 2 Neighboring gene karyopherin subunit alpha 2 pseudogene 3 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:62755217-62755429 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:62773916-62774585 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:62774586-62775254 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8849 Neighboring gene Rho GTPase activating protein 27 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8850 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:62781097-62781856 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr17:62782294-62783493 Neighboring gene microRNA 6080 Neighboring gene pleckstrin homology and RUN domain containing M1 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:62794173-62794673 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:62817908-62818408 Neighboring gene microRNA 4315-2

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_052568.2 

    Range
    101..899
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    64761914..64762712 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    65631666..65632464 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)