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Tmem139 transmembrane protein 139 [ Mus musculus (house mouse) ]

Gene ID: 109218, updated on 21-Apr-2024

Summary

Official Symbol
Tmem139provided by MGI
Official Full Name
transmembrane protein 139provided by MGI
Primary source
MGI:MGI:1924444
See related
Ensembl:ENSMUSG00000071506 AllianceGenome:MGI:1924444
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
A930027H06Rik
Summary
Orthologous to human TMEM139 (transmembrane protein 139). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in duodenum adult (RPKM 12.1), colon adult (RPKM 11.7) and 8 other tissues See more
Orthologs
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Genomic context

Location:
6 B2.1; 6 20.54 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (42238866..42241489)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (42261932..42264555)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene taste receptor, type 2, member 144 Neighboring gene STARR-positive B cell enhancer mm9_chr6:42195755-42196055 Neighboring gene glutathione S-transferase kappa 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:42214692-42214906 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:42214909-42215092 Neighboring gene caspase 2 Neighboring gene chloride channel, voltage-sensitive 1 Neighboring gene predicted gene, 38797

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1)  1 citation
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_175408.4NP_780617.2  transmembrane protein 139

    See identical proteins and their annotated locations for NP_780617.2

    Status: VALIDATED

    Source sequence(s)
    BC096053, BY032793, BY081702, CF585299
    Consensus CDS
    CCDS51757.1
    UniProtKB/TrEMBL
    E9PX92
    Related
    ENSMUSP00000100590.3, ENSMUST00000095987.4
    Conserved Domains (1) summary
    pfam15345
    Location:67194
    TMEM51; Transmembrane protein 51

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    42238866..42241489
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006505327.4XP_006505390.1  transmembrane protein 139 isoform X1

    See identical proteins and their annotated locations for XP_006505390.1

    UniProtKB/TrEMBL
    E9PX92
    Conserved Domains (1) summary
    pfam15345
    Location:67194
    TMEM51; Transmembrane protein 51
  2. XM_006505328.4XP_006505391.1  transmembrane protein 139 isoform X1

    See identical proteins and their annotated locations for XP_006505391.1

    UniProtKB/TrEMBL
    E9PX92
    Conserved Domains (1) summary
    pfam15345
    Location:67194
    TMEM51; Transmembrane protein 51
  3. XM_006505326.4XP_006505389.1  transmembrane protein 139 isoform X1

    See identical proteins and their annotated locations for XP_006505389.1

    UniProtKB/TrEMBL
    E9PX92
    Conserved Domains (1) summary
    pfam15345
    Location:67194
    TMEM51; Transmembrane protein 51