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A930024E05Rik RIKEN cDNA A930024E05 gene [ Mus musculus (house mouse) ]

Gene ID: 109202, updated on 8-Feb-2024

Summary

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Official Symbol
A930024E05Rikprovided by MGI
Official Full Name
RIKEN cDNA A930024E05 geneprovided by MGI
Primary source
MGI:MGI:1924414
See related
Ensembl:ENSMUSG00000056735 AllianceGenome:MGI:1924414
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Kancr; LncKdm2b
Summary
Is expressed in cerebral cortex and cerebral cortex mantle layer. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in testis adult (RPKM 6.0), thymus adult (RPKM 4.6) and 22 other tissues See more
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Genomic context

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Location:
5 F; 5 62.71 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (123127417..123136408)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (122989354..122998345)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene ring finger protein 34 Neighboring gene lysine (K)-specific demethylase 2B Neighboring gene STARR-seq mESC enhancer starr_14301 Neighboring gene STARR-positive B cell enhancer ABC_E3615 Neighboring gene predicted gene, 33118 Neighboring gene STARR-seq mESC enhancer starr_14304 Neighboring gene STARR-positive B cell enhancer ABC_E3616 Neighboring gene predicted gene 2479 Neighboring gene ORAI calcium release-activated calcium modulator 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Long noncoding RNA lncKdm2b is required for ILC3 maintenance by initiation of Zfp292 expression. Liu B, et al. Nat Immunol, 2017 May. PMID 28319097
  2. Molecular architecture of lineage allocation and tissue organization in early mouse embryo. Peng G, et al. Nature, 2019 Aug. PMID 31391582
  3. Long non-coding RNA LncKdm2b regulates cortical neuronal differentiation by cis-activating Kdm2b. Li W, et al. Protein Cell, 2020 Mar. PMID 31317506, Free PMC Article
  4. The Epigenetic Factor Landscape of Developing Neocortex Is Regulated by Transcription Factors Pax6→ Tbr2→ Tbr1. Elsen GE, et al. Front Neurosci, 2018. PMID 30186101, Free PMC Article
  5. Molecular Profiling Reveals Involvement of ESCO2 in Intermediate Progenitor Cell Maintenance in the Developing Mouse Cortex. Ulmke PA, et al. Stem Cell Reports, 2021 Apr 13. PMID 33798452, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045820.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK042918, AW049932
    Related
    ENSMUST00000148466.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    123127417..123136408
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_175405.2: Suppressed sequence

    Description
    NM_175405.2: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases