Lhfpl6 LHFPL tetraspan subfamily member 6 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Lhfpl6provided by MGI
Official Full Name: LHFPL tetraspan subfamily member 6provided by MGI
Primary source: MGI:MGI:1920048
See related: Ensembl:ENSMUSG00000048332 AllianceGenome:MGI:1920048
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Lhfp; 2810489O06Rik
Summary: Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in several structures, including brain; genitourinary system; hemolymphoid system gland; skin; and spinal cord lateral wall. Orthologous to human LHFPL6 (LHFPL tetraspan subfamily member 6). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Broad expression in lung adult (RPKM 110.8), bladder adult (RPKM 42.4) and 23 other tissues See more
Orthologs: human all
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Genomic context

Location:: 3 C; 3 24.17 cM

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	3	NC_000069.7 (52948968..53169100)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	3	NC_000069.6 (53041547..53261679)

Chromosome 3 - NC_000069.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Lhfp is a regulator of osteoblast activity and bone mass.
Title: Mouse genome-wide association and systems genetics identifies Lhfp as a regulator of bone mass.

Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Gene trapped (1)
Endonuclease-mediated (2)

General gene information

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Markers

D3Mit67 (e-PCR), detects polymorphism
- UniSTS:129835

D3Mit184 (e-PCR), detects polymorphism
- UniSTS:129605

AI194968 (e-PCR)
- UniSTS:159113

NoName (e-PCR)
- UniSTS:234678

RH143913 (e-PCR)
- UniSTS:233159

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: LHFPL tetraspan subfamily member 6 protein

Names: lipoma HMGIC fusion partner

NP_780595.1

EC 3.6.5.4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.