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Gm20911 predicted gene, 20911 [ Mus musculus (house mouse) ]

Gene ID: 108168582, updated on 8-Feb-2024

Summary

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Official Symbol
Gm20911provided by MGI
Official Full Name
predicted gene, 20911provided by MGI
Primary source
MGI:MGI:5434267
See related
Ensembl:ENSMUSG00000099894 AllianceGenome:MGI:5434267
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be involved in meiotic cell cycle and spermatid development. Predicted to be active in synaptonemal complex. Human ortholog(s) of this gene implicated in spermatogenic failure 4. Orthologous to human SYCP3 (synaptonemal complex protein 3). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
Y; Y D
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) Y NC_000087.8 (81470698..81495159)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) Y NC_000087.7 (81459429..81483890)

Chromosome Y - NC_000087.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 20841 Neighboring gene predicted gene, 21282 Neighboring gene predicted gene, 20912 Neighboring gene predicted gene, 20801

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in meiotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in spermatid development IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in synaptonemal complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
X-linked lymphocyte-regulated protein PM1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000087.8 Reference GRCm39 C57BL/6J

    Range
    81470698..81495159
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030251570.1 → XP_030107430.1  X-linked lymphocyte-regulated protein PM1-like

    UniProtKB/TrEMBL
    A0A087WPA5, A0A087WPP3, A0A087WQL3, A0A087WSS0, A0A0A6YW38
    Related
    ENSMUSP00000141161.2, ENSMUST00000187135.2
    Conserved Domains (1) summary
    pfam04803
    Location:112 → 215
    Cor1; Cor1/Xlr/Xmr conserved region
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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