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Gm27217 predicted gene 27217 [ Mus musculus (house mouse) ]

Gene ID: 108168350, updated on 8-Feb-2024

Summary

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Official Symbol
Gm27217provided by MGI
Official Full Name
predicted gene 27217provided by MGI
Primary source
MGI:MGI:5521060
See related
Ensembl:ENSMUSG00000098552 AllianceGenome:MGI:5521060
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in whole brain E14.5 (RPKM 1.8), CNS E14 (RPKM 1.4) and 8 other tissues See more
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Genomic context

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See Gm27217 in Genome Data Viewer
Location:
17 C; 17
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (52900009..52909688, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (52592981..52602660, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_42815 Neighboring gene predicted gene, 41600 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:52607808-52608039 Neighboring gene predicted gene 5094 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:52740540-52740828 Neighboring gene potassium voltage-gated channel, subfamily H (eag-related), member 8 Neighboring gene STARR-seq mESC enhancer starr_42820 Neighboring gene STARR-seq mESC enhancer starr_42821 Neighboring gene STARR-seq mESC enhancer starr_42822 Neighboring gene STARR-seq mESC enhancer starr_42824 Neighboring gene STARR-seq mESC enhancer starr_42825 Neighboring gene STARR-seq mESC enhancer starr_42826 Neighboring gene STARR-seq mESC enhancer starr_42827 Neighboring gene 3-phosphoglycerate dehydrogenase pseudogene Neighboring gene thioredoxin-like protein 4A pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Mutagenesis of diploid mammalian genes by gene entrapment. Lin Q, et al. Nucleic Acids Res, 2006. PMID 17062627, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_155517.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK139095
    Related
    ENSMUST00000183438.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    52900009..52909688 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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