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AU020206 expressed sequence AU020206 [ Mus musculus (house mouse) ]

Gene ID: 108167440, updated on 8-Feb-2024

Summary

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Official Symbol
AU020206provided by MGI
Official Full Name
expressed sequence AU020206provided by MGI
Primary source
MGI:MGI:2142134
See related
Ensembl:ENSMUSG00000097415 AllianceGenome:MGI:2142134
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in lung adult (RPKM 19.9), ovary adult (RPKM 16.7) and 21 other tissues See more
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Genomic context

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See AU020206 in Genome Data Viewer
Location:
7 D1; 7 43.76 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (75418786..75431868, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (75769038..75782120, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr7:82600130-82600431 Neighboring gene STARR-positive B cell enhancer mm9_chr7:82601583-82601884 Neighboring gene predicted gene, 46017 Neighboring gene A kinase anchor protein 13 Neighboring gene STARR-positive B cell enhancer mm9_chr7:82717070-82717370 Neighboring gene STARR-seq mESC enhancer starr_19219 Neighboring gene STARR-positive B cell enhancer ABC_E6558 Neighboring gene STARR-seq mESC enhancer starr_19221 Neighboring gene STARR-seq mESC enhancer starr_19222 Neighboring gene STARR-positive B cell enhancer ABC_E4935 Neighboring gene STARR-positive B cell enhancer ABC_E4936 Neighboring gene STARR-positive B cell enhancer mm9_chr7:82846572-82846872 Neighboring gene STARR-seq mESC enhancer starr_19225 Neighboring gene STARR-seq mESC enhancer starr_19226 Neighboring gene STARR-positive B cell enhancer ABC_E2824 Neighboring gene CRISPRi-validated cis-regulatory element for Akap13 Neighboring gene STARR-positive B cell enhancer ABC_E6559 Neighboring gene STARR-positive B cell enhancer ABC_E2825 Neighboring gene STARR-positive B cell enhancer ABC_E6560 Neighboring gene STARR-seq mESC enhancer starr_19228 Neighboring gene STARR-seq mESC enhancer starr_19229 Neighboring gene STARR-positive B cell enhancer ABC_E447 Neighboring gene predicted gene, 51489 Neighboring gene STARR-seq mESC enhancer starr_19230 Neighboring gene kelch-like 25

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
  2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  3. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  4. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
  5. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_165329.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC158749
    Related
    ENSMUST00000181224.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    75418786..75431868 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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