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LINC03047 long intergenic non-protein coding RNA 3047 [ Homo sapiens (human) ]

Gene ID: 107986898, updated on 10-Oct-2023

Summary

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Official Symbol
LINC03047provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3047provided by HGNC
Primary source
HGNC:HGNC:56265
See related
Ensembl:ENSG00000253633
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KB-1980E6.3
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
8q22.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (102528821..102529851)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375683 Neighboring gene heat shock protein family E (Hsp10) member 1 pseudogene 14 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:103497414-103497927 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:103518835-103519335 Neighboring gene ribosomal protein S12 pseudogene 15 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27758 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27759 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27760 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27761 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:103543539-103544039 Neighboring gene uncharacterized LOC124901998 Neighboring gene Sharpr-MPRA regulatory region 8570 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:103548698-103549897 Neighboring gene RNA, U6 small nuclear 1224, pseudogene Neighboring gene uncharacterized LOC105375684

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000008.11 Chromosome 8 Reference GRCh38.p14 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Long noncoding RNA KB-1980E6.3 promotes breast cancer progression through the PI3K/AKT signalling pathway. He L, et al. Pathol Res Pract, 2022 Jun. PMID 35461041

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    102528821..102529851
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001745731.2 RNA Sequence

    Related
    ENST00000523572.2
Nucleotide Protein
Heading Accession and Version

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