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PPIC-AS1 PPIC antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 107986447, updated on 10-Oct-2023

Summary

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Official Symbol
PPIC-AS1provided by HGNC
Official Full Name
PPIC antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40464
See related
AllianceGenome:HGNC:40464
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
5q23.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (123035922..123056770)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (123552469..123573299)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene sorting nexin 24 Neighboring gene small nucleolar RNA U13 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:122364057-122365256 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:122371116-122371288 Neighboring gene RNA, 7SL, cytoplasmic 689, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16272 Neighboring gene peptidylprolyl isomerase C Neighboring gene RNA, 7SL, cytoplasmic 711, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:122423586-122424130 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:122424131-122424675 Neighboring gene PRDM6 antisense RNA 1 Neighboring gene PR/SET domain 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    123035922..123056770
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001742868.2 RNA Sequence

  2. XR_001742869.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    123552469..123573299
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075908.1 RNA Sequence

  2. XR_007075909.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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