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SLC1A3-AS1 SLC1A3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 107986412, updated on 10-Oct-2023

Summary

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Official Symbol
SLC1A3-AS1provided by HGNC
Official Full Name
SLC1A3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:56374
See related
Ensembl:ENSG00000250155
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in lymph node (RPKM 2.1), spleen (RPKM 1.8) and 12 other tissues See more
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Genomic context

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Location:
5p13.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (36665895..36725188, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (36915713..36975032, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900963 Neighboring gene Sharpr-MPRA regulatory region 9147 Neighboring gene MPRA-validated peak5226 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr5:36590466-36591251 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22479 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:36619081-36619595 Neighboring gene ribosomal protein L39 pseudogene 22 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:36646148-36647347 Neighboring gene solute carrier family 1 member 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15973 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22480 Neighboring gene Sharpr-MPRA regulatory region 9536 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22481 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22482 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22483 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15974 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22484 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15975 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15976 Neighboring gene NIPBL divergent transcript Neighboring gene keratin 18 pseudogene 31 Neighboring gene NIPBL cohesin loading factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Case-only design identifies interactions of genetic risk variants at SIGLEC5 and PLG with the lncRNA CTD-2353F22.1 implying the importance of periodontal wound healing for disease aetiology. Müller R, et al. J Clin Periodontol, 2023 Jan. PMID 36129033

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Case-only design identifies interactions of genetic risk variants at SIGLEC5 and PLG with the lncRNA CTD-2353F22.1 implying the importance of periodontal wound healing for disease aetiology.
    Title: Case-only design identifies interactions of genetic risk variants at SIGLEC5 and PLG with the lncRNA CTD-2353F22.1 implying the importance of periodontal wound healing for disease aetiology.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

General gene information

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Other Names

  • CTD-2353F22.1

Clone Names

  • AC008957.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    36665895..36725188 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007058736.1 RNA Sequence

  2. XR_001742638.2 RNA Sequence

    Related
    ENST00000508745.2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    36915713..36975032 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075560.1 RNA Sequence

  2. XR_007075559.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases