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LINC02100 long intergenic non-protein coding RNA 2100 [ Homo sapiens (human) ]

Gene ID: 107986408, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02100provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2100provided by HGNC
Primary source
HGNC:HGNC:52955
See related
AllianceGenome:HGNC:52955
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
5p14.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (18725966..18746156, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (18729560..18748674, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD81 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:18393999-18394637 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:18535181-18535907 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:18535908-18536633 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:18539149-18539858 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:18543711-18544225 Neighboring gene RNA, 7SL, cytoplasmic 58, pseudogene Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:18669117-18669718 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22425 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:18732766-18733965 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:18735803-18736473 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22426 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22427 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22428 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22429 Neighboring gene small nucleolar RNA U13 Neighboring gene MPRA-validated peak5171 silencer Neighboring gene UBE2V1 pseudogene 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    18725966..18746156 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001742616.2 RNA Sequence

  2. XR_007059121.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    18729560..18748674 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075516.1 RNA Sequence

  2. XR_007075517.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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