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LINC02435 long intergenic non-protein coding RNA 2435 [ Homo sapiens (human) ]

Gene ID: 107986311, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02435provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2435provided by HGNC
Primary source
HGNC:HGNC:53366
See related
AllianceGenome:HGNC:53366
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
4q28.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (123521919..123527582)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (126825994..126831894)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15667 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:124339462-124340019 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:124356795-124357294 Neighboring gene sprouty RTK signaling antagonist 1 Neighboring gene VISTA enhancer hs1582 Neighboring gene NANOG hESC enhancer GRCh37_chr4:124422837-124423338 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:124426696-124427543 Neighboring gene tRNA-Cys (anticodon GCA) 2-1 Neighboring gene uncharacterized LOC105377405 Neighboring gene MPRA-validated peak5100 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:124468793-124469376 Neighboring gene NANOG hESC enhancer GRCh37_chr4:124485860-124486361 Neighboring gene NANOG hESC enhancer GRCh37_chr4:124506198-124506715 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21881 Neighboring gene Sharpr-MPRA regulatory region 12612 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:124521451-124522096 Neighboring gene long intergenic non-protein coding RNA 1091 Neighboring gene uncharacterized LOC124900775

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    123521919..123527582
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001741811.2 RNA Sequence

  2. XR_001741812.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    126825994..126831894
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007074952.1 RNA Sequence

  2. XR_007074953.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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