U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02438 long intergenic non-protein coding RNA 2438 [ Homo sapiens (human) ]

Gene ID: 107986264, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC02438provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2438provided by HGNC
Primary source
HGNC:HGNC:53370
See related
AllianceGenome:HGNC:53370
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
4p15.31
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (19218592..19456990, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (19201094..19439759, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986263 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21361 Neighboring gene NANOG hESC enhancer GRCh37_chr4:19012316-19012830 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:19085315-19085875 Neighboring gene RNA, 5S ribosomal pseudogene 157 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_77337 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:19431070-19431946 Neighboring gene uncharacterized LOC105374511 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_77374 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:19777224-19778423 Neighboring gene ribosomal protein L21 pseudogene 46 Neighboring gene uncharacterized LOC105374513

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    19218592..19456990 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001741605.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    19201094..19439759 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007074517.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases