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LINC02512 long intergenic non-protein coding RNA 2512 [ Homo sapiens (human) ]

Gene ID: 107986241, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02512provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2512provided by HGNC
Primary source
HGNC:HGNC:53501
See related
AllianceGenome:HGNC:53501
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
4q33
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (170342821..170399139)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (173700487..173756734)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:171031353-171031916 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:171037443-171037979 Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 3A pseudogene 1 Neighboring gene Sharpr-MPRA regulatory region 13452 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_76196 Neighboring gene long intergenic non-protein coding RNA 1612 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22147 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:171259917-171261116 Neighboring gene MPRA-validated peak5147 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22149 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:171431628-171432827 Neighboring gene heat shock protein 90 alpha family class A member 6, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:171664428-171664928 Neighboring gene long intergenic non-protein coding RNA 2382

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    170342821..170399139
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001741530.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    173700487..173756734
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075143.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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