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LOC107986178 uncharacterized LOC107986178 [ Homo sapiens (human) ]

Gene ID: 107986178, updated on 25-Oct-2023

Summary

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Gene symbol
LOC107986178
Gene description
uncharacterized LOC107986178
See related
Ensembl:ENSG00000249631
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107986178 in Genome Data Viewer
Location:
4p15.33
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (11543973..11789866)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (11519839..11768263)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:11385598-11386169 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:11398409-11399608 Neighboring gene RNA binding protein with serine rich domain 1 pseudogene 1 Neighboring gene microRNA 572 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21321 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15283 Neighboring gene RNA, 5S ribosomal pseudogene 156 Neighboring gene heparan sulfate-glucosamine 3-sulfotransferase 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21322 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:11506548-11507747 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:11633687-11634886 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:11651807-11653006 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:11700041-11701240 Neighboring gene long intergenic non-protein coding RNA 2360 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:11807700-11808329 Neighboring gene microRNA 12113 Neighboring gene uncharacterized LOC105374489 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:11823529-11824136 Neighboring gene uncharacterized LOC107986179

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188483.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005699, AC104686

  2. NR_188484.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005699, AC104686
    Related
    ENST00000658916.1

  3. NR_188485.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005699, AC104686
    Related
    ENST00000667921.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    11543973..11789866
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    11519839..11768263
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases