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IL20RB-AS1 IL20RB antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 107986136, updated on 10-Oct-2023

Summary

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Official Symbol
IL20RB-AS1provided by HGNC
Official Full Name
IL20RB antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40298
See related
AllianceGenome:HGNC:40298
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in fat (RPKM 3.5), lymph node (RPKM 3.0) and 25 other tissues See more
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Genomic context

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Location:
3q22.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (136945986..136982191, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (139686673..139722847, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20589 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20590 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14762 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20592 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20591 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:136587915-136588414 Neighboring gene solute carrier family 35 member G2 Neighboring gene NCK1 divergent transcript Neighboring gene RAD51AP1 pseudogene 1 Neighboring gene MPRA-validated peak4840 silencer Neighboring gene NCK adaptor protein 1 Neighboring gene Sharpr-MPRA regulatory region 14292 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:136725903-136726404 Neighboring gene CRISPRi-validated cis-regulatory element chr3.4045 Neighboring gene interleukin 20 receptor subunit beta Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:136741910-136742410 Neighboring gene MPRA-validated peak4841 silencer Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:136751222-136752088 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20594 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20595 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:136930163-136930662 Neighboring gene VISTA enhancer hs208 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:137038167-137039366 Neighboring gene VISTA enhancer hs209 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:137050490-137051689 Neighboring gene VISTA enhancer hs210 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:137179051-137179600 Neighboring gene VISTA enhancer hs653 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20598 Neighboring gene RNA, 5S ribosomal pseudogene 142 Neighboring gene MTCH2 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Other Names

  • IL20RB antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183727.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011597

  2. NR_183728.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011597

  3. NR_183729.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011597

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    136945986..136982191 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    139686673..139722847 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases