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LINC01965 long intergenic non-protein coding RNA 1965 [ Homo sapiens (human) ]

Gene ID: 107985928, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01965provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1965provided by HGNC
Primary source
HGNC:HGNC:52790
See related
AllianceGenome:HGNC:52790
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
2q12.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (103874289..104080270)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (104503993..104532172)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373520 Neighboring gene uncharacterized LOC107985927 Neighboring gene VISTA enhancer hs1529 Neighboring gene VISTA enhancer hs1303 Neighboring gene VISTA enhancer hs1554 Neighboring gene uncharacterized LOC105373521 Neighboring gene uncharacterized LOC105373523 Neighboring gene VISTA enhancer hs401 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:104743310-104743847 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:104743848-104744384 Neighboring gene uncharacterized LOC105373522

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    103874289..104080270
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001739621.2 RNA Sequence

  2. XR_001739622.2 RNA Sequence

  3. XR_007088674.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    104503993..104532172
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007071616.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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