U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC01791 long intergenic non-protein coding RNA 1791 [ Homo sapiens (human) ]

Gene ID: 107985312, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC01791provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1791provided by HGNC
Primary source
HGNC:HGNC:52581
See related
Ensembl:ENSG00000267777 AllianceGenome:HGNC:52581
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LINC01791 in Genome Data Viewer
Location:
19q12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (31167510..31207663)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (33685766..33726258)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (31658416..31698569)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900621 Neighboring gene uncharacterized LOC105372356 Neighboring gene uncharacterized LOC105372358 Neighboring gene teashirt zinc finger homeobox 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:31702527-31703027 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:31744812-31745810 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:31745811-31746808 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:31779704-31780204 Neighboring gene NANOG hESC enhancer GRCh37_chr19:31809776-31810277 Neighboring gene TSHZ3 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:31831709-31832233 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:31843549-31844050 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:31844051-31844550 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:31845493-31846136 Neighboring gene uncharacterized LOC124904794 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:31879539-31880040 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr19:31909131-31910077 Neighboring gene Sharpr-MPRA regulatory region 8466 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:31939361-31939861 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:31990532-31991116 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:31991117-31991701 Neighboring gene long intergenic non-protein coding RNA 2841 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr19:32043944-32045143

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147209.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025809, AI827687, BX110349
    Related
    ENST00000589511.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    31167510..31207663
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    33685766..33726258
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases