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LOC107985216 uncharacterized LOC107985216 [ Homo sapiens (human) ]

Gene ID: 107985216, updated on 10-Oct-2023

Summary

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Gene symbol
LOC107985216
Gene description
uncharacterized LOC107985216
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in ovary (RPKM 5.4), endometrium (RPKM 1.9) and 21 other tissues See more
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Genomic context

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Location:
1q23.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (159854847..159867685)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (158991852..159004699)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene SLAM family member 8 Neighboring gene small nucleolar RNA host gene 28 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:159815652-159816152 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:159816153-159816653 Neighboring gene small nucleolar RNA SNORD64 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1455 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:159830948-159831862 Neighboring gene V-set and immunoglobulin domain containing 8 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:159831863-159832775 Neighboring gene Sharpr-MPRA regulatory region 5062 Neighboring gene cilia and flagella associated protein 45 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:159859176-159860375 Neighboring gene uncharacterized LOC124904434 Neighboring gene microRNA 4259

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    159854847..159867685
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001738261.2 RNA Sequence

  2. XR_001738263.2 RNA Sequence

  3. XR_001738262.2 RNA Sequence

  4. XR_007066675.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    158991852..159004699
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070776.1 RNA Sequence

  2. XR_007070775.1 RNA Sequence

  3. XR_007070772.1 RNA Sequence

  4. XR_007070774.1 RNA Sequence

  5. XR_007070773.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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