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LINC01768 long intergenic non-protein coding RNA 1768 [ Homo sapiens (human) ]

Gene ID: 107985167, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01768provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1768provided by HGNC
Primary source
HGNC:HGNC:52558
See related
AllianceGenome:HGNC:52558
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
1p13.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (109828054..109905893)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (109838198..109916041)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904258 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:110303188-110303917 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:110312201-110313156 Neighboring gene Sharpr-MPRA regulatory region 10752 Neighboring gene EPS8 signaling adaptor L3 Neighboring gene Sharpr-MPRA regulatory region 9477 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:110329469-110330352 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:110330353-110331236 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1452 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:110350451-110351094 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:110351095-110351737 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1453 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1454 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1159 Neighboring gene NADH:ubiquinone oxidoreductase subunit A5 pseudogene 10 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1160 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:110407495-110408040 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:110420113-110420301 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:110422869-110423369 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:110423473-110424313 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:110424314-110425153 Neighboring gene CRISPRi-validated cis-regulatory element chr1.7635 Neighboring gene Sharpr-MPRA regulatory region 12342 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1455 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1456 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:110453680-110454180 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:110454181-110454681 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1457 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:110473698-110474646 Neighboring gene colony stimulating factor 1 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:110502441-110503012 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:110503013-110503582 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1163 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1164 Neighboring gene adenosylhomocysteinase like 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1458 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:110560640-110561839

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    109828054..109905893
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001738180.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    109838198..109916041
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070523.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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