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LINC01916 long intergenic non-protein coding RNA 1916 [ Homo sapiens (human) ]

Gene ID: 107985128, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01916provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1916provided by HGNC
Primary source
HGNC:HGNC:52735
See related
Ensembl:ENSG00000264232 AllianceGenome:HGNC:52735
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
18q22.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (65424013..65448230)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (65630058..65654350)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985178 Neighboring gene uncharacterized LOC101927404 Neighboring gene uncharacterized LOC105372168 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:63032444-63033384 Neighboring gene VISTA enhancer hs947 Neighboring gene uncharacterized LOC105372169 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr18:63231174-63232373 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:63287142-63287684 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:63287685-63288227 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr18:63326730-63327929 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:63418189-63418690 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr18:63547268-63548467 Neighboring gene cadherin 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    65424013..65448230
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001753544.3 RNA Sequence

    Related
    ENST00000582028.2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    65630058..65654350
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007088156.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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