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CENPN-AS1 CENPN antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 107984858, updated on 10-Oct-2023

Summary

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Official Symbol
CENPN-AS1provided by HGNC
Official Full Name
CENPN antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55106
See related
AllianceGenome:HGNC:55106
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 1.1), prostate (RPKM 0.6) and 23 other tissues See more
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Genomic context

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Location:
16q23.2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (81016741..81040311, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (87078276..87101841, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene androgen receptor regulated long noncoding RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11172 Neighboring gene Sharpr-MPRA regulatory region 7727 Neighboring gene C-X9-C motif containing 2 Neighboring gene NANOG hESC enhancer GRCh37_chr16:81032399-81032965 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11173 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7748 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11174 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11175 Neighboring gene centromere protein N Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7749 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7750 Neighboring gene ATM interactor Neighboring gene chromosome 16 open reading frame 46 Neighboring gene uncharacterized LOC105371361 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11176 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:81110606-81111266 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:81111267-81111925 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7751 Neighboring gene glycine cleavage system protein H

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    81016741..81040311 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007065136.1 RNA Sequence

  2. XR_007065134.1 RNA Sequence

  3. XR_007065133.1 RNA Sequence

  4. XR_007065132.1 RNA Sequence

  5. XR_007065130.1 RNA Sequence

  6. XR_007065135.1 RNA Sequence

  7. XR_001752279.2 RNA Sequence

  8. XR_007065131.1 RNA Sequence

  9. XR_001752278.2 RNA Sequence

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791800.1 Reference GRCh38.p14 PATCHES

    Range
    64980..88550 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007069543.1 RNA Sequence

  2. XR_007069542.1 RNA Sequence

  3. XR_001752276.3 RNA Sequence

  4. XR_001752274.2 RNA Sequence

  5. XR_001752273.2 RNA Sequence

  6. XR_001752277.2 RNA Sequence

  7. XR_007069540.1 RNA Sequence

  8. XR_007069541.1 RNA Sequence

  9. XR_007069539.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    87078276..87101841 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007086699.1 RNA Sequence

  2. XR_007086697.1 RNA Sequence

  3. XR_007086696.1 RNA Sequence

  4. XR_007086695.1 RNA Sequence

  5. XR_007086691.1 RNA Sequence

  6. XR_007086698.1 RNA Sequence

  7. XR_007086693.1 RNA Sequence

  8. XR_007086694.1 RNA Sequence

  9. XR_007086692.1 RNA Sequence

Nucleotide Protein
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