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CORO1A-AS1 CORO1A antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 107984834, updated on 10-Oct-2023

Summary

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Official Symbol
CORO1A-AS1provided by HGNC
Official Full Name
CORO1A antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55367
See related
AllianceGenome:HGNC:55367
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in lymph node (RPKM 21.2), bone marrow (RPKM 18.2) and 10 other tissues See more
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Genomic context

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Location:
16p11.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (30183393..30184788, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (30467975..30469370, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene YPEL3 divergent transcript Neighboring gene Sharpr-MPRA regulatory region 9068 Neighboring gene glycerophosphodiester phosphodiesterase domain containing 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7356 Neighboring gene mitogen-activated protein kinase 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10691 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10692 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:30187986-30188486 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10693 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7357 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7358 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:30195204-30195744 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:30195745-30196286 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:30196287-30196826 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:30196827-30197368 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10695 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:30197909-30198449 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:30198450-30198989 Neighboring gene coronin 1A Neighboring gene SLX1A-SULT1A3 readthrough (NMD candidate) Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:30204716-30205440 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:30206166-30206889 Neighboring gene bolA family member 2B Neighboring gene SLX1 homolog A, structure-specific endonuclease subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186357.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012645

  2. NR_186358.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012645

  3. NR_186359.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012645

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    30183393..30184788 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    30467975..30469370 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases