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LINC02248 long intergenic non-protein coding RNA 2248 [ Homo sapiens (human) ]

Gene ID: 107984780, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02248provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2248provided by HGNC
Primary source
HGNC:HGNC:53147
See related
Ensembl:ENSG00000235160 AllianceGenome:HGNC:53147
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward heart (RPKM 1.2) See more
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Genomic context

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Location:
15q12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (26395057..26489873)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (24135476..24192636)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370739 Neighboring gene Sharpr-MPRA regulatory region 9219 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:26371289-26371981 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:26375077-26375665 Neighboring gene long intergenic non-protein coding RNA 929 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26421889-26422390 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26422391-26422890 Neighboring gene NANOG hESC enhancer GRCh37_chr15:26476139-26476674 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:26481073-26481711 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:26485506-26486446 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr15:26488201-26488985 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26505515-26506014 Neighboring gene uncharacterized LOC124903568 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr15:26570561-26571281 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:26606040-26606210 Neighboring gene uncharacterized LOC105370740 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26655893-26656682 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26707088-26707588 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26776555-26777054 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr15:26791415-26792614 Neighboring gene gamma-aminobutyric acid type A receptor subunit beta3 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr15:26860170-26861369 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:26893977-26894477 Neighboring gene uncharacterized LOC124903578 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:26933878-26934623 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:26963662-26964469 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:26964470-26965276 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr15:26965277-26966083 Neighboring gene uncharacterized LOC112268151 Neighboring gene NANOG hESC enhancer GRCh37_chr15:27010978-27011567 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr15:27011568-27012156 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr15:27012157-27012746

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    26395057..26489873
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001751453.2 RNA Sequence

  2. XR_001751451.2 RNA Sequence

  3. XR_001751452.2 RNA Sequence

    Related
    ENST00000701365.1

  4. XR_001751449.2 RNA Sequence

    Related
    ENST00000658140.1

  5. XR_001751454.2 RNA Sequence

  6. XR_002957734.1 RNA Sequence

  7. XR_001751455.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    24135476..24192636
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007085533.1 RNA Sequence

  2. XR_007085535.1 RNA Sequence

  3. XR_007085531.1 RNA Sequence

  4. XR_007085534.1 RNA Sequence

  5. XR_007085536.1 RNA Sequence

  6. XR_007085532.1 RNA Sequence

Nucleotide Protein
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