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CPNE8-AS1 CPNE8 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 107984504, updated on 10-Oct-2023

Summary

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Official Symbol
CPNE8-AS1provided by HGNC
Official Full Name
CPNE8 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:53937
See related
Ensembl:ENSG00000257718 AllianceGenome:HGNC:53937
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 1.0), liver (RPKM 0.9) and 24 other tissues See more
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Genomic context

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Location:
12q12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (38905712..38909592)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (38855477..38859358)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:38709647-38710846 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6195 Neighboring gene ALG10 alpha-1,2-glucosyltransferase B Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:38778512-38779711 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:38902019-38902518 Neighboring gene Sharpr-MPRA regulatory region 819 Neighboring gene uncharacterized LOC124902917 Neighboring gene copine 8 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:39193759-39194354 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4344 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4345 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6196 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4346 Neighboring gene sucrase-isomaltase (alpha-glucosidase) pseudogene Neighboring gene uncharacterized LOC107984484

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Overexpression of long non-coding RNA RP11-396F22.1 correlates poor prognosis of patients with early-stage cervical cancer. Zhao Y, et al. Am J Transl Res, 2018. PMID 29636859, Free PMC Article
  2. Identification of lncRNAs by microarray analysis reveals the potential role of lncRNAs in cervical cancer pathogenesis. Huang J, et al. Oncol Lett, 2018 Apr. PMID 29552195, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

General gene information

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Other Names

  • RP11-396F22.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    38905712..38909592
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007063275.1 RNA Sequence

  2. XR_001749083.3 RNA Sequence

    Related
    ENST00000551152.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    38855477..38859358
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007083061.1 RNA Sequence

  2. XR_007083060.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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