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LRRK2-DT LRRK2 divergent transcript [ Homo sapiens (human) ]

Gene ID: 107984474, updated on 10-Oct-2023

Summary

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Official Symbol
LRRK2-DTprovided by HGNC
Official Full Name
LRRK2 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:40848
See related
AllianceGenome:HGNC:40848
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
12q12
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (40141766..40223822, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (40091677..40176180, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene solute carrier family 2 member 13 Neighboring gene uncharacterized LOC112268095 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_28378 Neighboring gene Sharpr-MPRA regulatory region 12222 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4350 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4351 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4352 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4353 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_28385 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4354 Neighboring gene ribosomal protein L30 pseudogene 13 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6206 Neighboring gene long intergenic non-protein coding RNA 2471 Neighboring gene uncharacterized LOC105369735 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4355 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6207 Neighboring gene long intergenic non-protein coding RNA 1779 Neighboring gene leucine rich repeat kinase 2 Neighboring gene uncharacterized LOC105369736 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_28494 Neighboring gene mucin 19, oligomeric Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:40868238-40869437 Neighboring gene microtubule associated protein 6 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186756.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079630

  2. NR_186757.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079630

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    40141766..40223822 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    40091677..40176180 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases