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LOC107984399 uncharacterized LOC107984399 [ Homo sapiens (human) ]

Gene ID: 107984399, updated on 14-Mar-2024

Summary

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Gene symbol
LOC107984399
Gene description
uncharacterized LOC107984399
See related
Ensembl:ENSG00000176984
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Orthologs
all
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Genomic context

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See LOC107984399 in Genome Data Viewer
Location:
11q23.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (120168977..120171681)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (120191815..120194520)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (120039685..120042389)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378956 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:119952219-119953418 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:119967440-119968306 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5635 Neighboring gene tripartite motif containing 29 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:119994383-119994890 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr11:119995312-119996511 Neighboring gene uncharacterized LOC105369529 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_19417 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3985 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5636 Neighboring gene uncharacterized LOC124902773 Neighboring gene uncharacterized LOC105369530

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic variants near PDGFRA are associated with corneal curvature in Australians. Mishra A, et al. Invest Ophthalmol Vis Sci, 2012 Oct 11. PMID 22969067, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Homology

Clone Names

  • FLJ39662, AP000679.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_159965.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000679
    Related
    ENST00000319763.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    120168977..120171681
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    120191815..120194520
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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