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LINC02277 long intergenic non-protein coding RNA 2277 [ Homo sapiens (human) ]

Gene ID: 107984027, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02277provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2277provided by HGNC
Primary source
HGNC:HGNC:53193
See related
AllianceGenome:HGNC:53193
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
14q21.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (44392531..44481886, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (38580174..38673308, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2307 Neighboring gene chromosome 11 open reading frame 58 pseudogene Neighboring gene MPRA-validated peak2140 silencer Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr14:44785502-44786701 Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta pseudogene 1 Neighboring gene MPRA-validated peak2143 silencer Neighboring gene Sharpr-MPRA regulatory region 10127 Neighboring gene MPRA-validated peak2144 silencer Neighboring gene uncharacterized LOC105370473 Neighboring gene fibrous sheath CABYR binding protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    44392531..44481886 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001750743.3 RNA Sequence

  2. XR_001750744.3 RNA Sequence

  3. XR_002957611.2 RNA Sequence

  4. XR_001750745.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    38580174..38673308 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007084659.1 RNA Sequence

  2. XR_007084657.1 RNA Sequence

  3. XR_007084658.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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