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Tm9sf3 transmembrane 9 superfamily member 3 [ Mus musculus (house mouse) ]

Gene ID: 107358, updated on 30-Apr-2024

Summary

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Official Symbol
Tm9sf3provided by MGI
Official Full Name
transmembrane 9 superfamily member 3provided by MGI
Primary source
MGI:MGI:1914262
See related
Ensembl:ENSMUSG00000025016 AllianceGenome:MGI:1914262
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Smbp; mKIAA4036; 1810073M23Rik; 2810031D16Rik
Summary
Predicted to be involved in protein localization to membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human TM9SF3 (transmembrane 9 superfamily member 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in placenta adult (RPKM 39.6), bladder adult (RPKM 34.8) and 28 other tissues See more
Orthologs
human all
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Genomic context

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Location:
19 C3; 19 34.54 cM
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (41199281..41252443, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (41210842..41264004, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:41103805-41103914 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:41105621-41105774 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:41113653-41113854 Neighboring gene STARR-seq mESC enhancer starr_46143 Neighboring gene STARR-positive B cell enhancer mm9_chr19:41146037-41146338 Neighboring gene STARR-seq mESC enhancer starr_46144 Neighboring gene deoxynucleotidyltransferase, terminal Neighboring gene oligodendrocytic myelin paranodal and inner loop protein Neighboring gene tolloid-like 2 Neighboring gene STARR-seq mESC enhancer starr_46145 Neighboring gene STARR-positive B cell enhancer ABC_E11676 Neighboring gene predicted gene, 54045 Neighboring gene phosphoinositide-3-kinase adaptor protein 1 Neighboring gene predicted gene, 52406 Neighboring gene STARR-positive B cell enhancer ABC_E8750 Neighboring gene STARR-positive B cell enhancer ABC_E11030 Neighboring gene STARR-positive B cell enhancer ABC_E2526 Neighboring gene STARR-positive B cell enhancer ABC_E7652 Neighboring gene STARR-positive B cell enhancer ABC_E7653 Neighboring gene STARR-seq mESC enhancer starr_46150 Neighboring gene STARR-positive B cell enhancer ABC_E7654 Neighboring gene predicted gene, 33951

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene expression in the developing mouse retina by EST sequencing and microarray analysis. Mu X, et al. Nucleic Acids Res, 2001 Dec 15. PMID 11812828, Free PMC Article
  2. A global genomic transcriptional code associated with CNS-expressed genes. Bailey PJ, et al. Exp Cell Res, 2006 Oct 1. PMID 16919269
  3. Functional genomic landscape of cancer-intrinsic evasion of killing by T cells. Lawson KA, et al. Nature, 2020 Oct. PMID 32968282, Free PMC Article
  4. Irisin Mediates Effects on Bone and Fat via αV Integrin Receptors. Kim H, et al. Cell, 2018 Dec 13. PMID 30550785, Free PMC Article
  5. Fancd2 in vivo interaction network reveals a non-canonical role in mitochondrial function. Zhang T, et al. Sci Rep, 2017 Apr 5. PMID 28378742, Free PMC Article

See all (21) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (4) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • KIAA4036

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in protein localization to membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
transmembrane 9 superfamily member 3
Names
SM-11044 binding protein
transmembrane protein 9 superfamily member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_133352.2 → NP_579930.1  transmembrane 9 superfamily member 3 precursor

    See identical proteins and their annotated locations for NP_579930.1

    Status: VALIDATED

    Source sequence(s)
    AC133099, AF269151, CA529050
    Consensus CDS
    CCDS29808.1
    UniProtKB/Swiss-Prot
    Q9ET30
    UniProtKB/TrEMBL
    A0A498WGK6
    Related
    ENSMUSP00000158318.2, ENSMUST00000237871.2
    Conserved Domains (1) summary
    pfam02990
    Location:56 → 525
    EMP70; Endomembrane protein 70

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    41199281..41252443 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_178146.2: Suppressed sequence

    Description
    NM_178146.2: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ET30.1 GenPept UniProtKB/Swiss-Prot:Q9ET30

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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