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LINC01593 long intergenic non-protein coding RNA 1593 [ Homo sapiens (human) ]

Gene ID: 107178918, updated on 10-Oct-2023

Summary

Official Symbol
LINC01593provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1593provided by HGNC
Primary source
HGNC:HGNC:51583
See related
Ensembl:ENSG00000231221 AllianceGenome:HGNC:51583
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
2q12.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (108049200..108052755, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (108510772..108514328, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (108665656..108669211, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene 2q12.3 proximal recombination region Neighboring gene SRSF3 pseudogene 5 Neighboring gene solute carrier family 5 member 7 Neighboring gene NANOG hESC enhancer GRCh37_chr2:108691321-108691898 Neighboring gene actin family pseudogene 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:108771915-108772153 Neighboring gene long intergenic non-protein coding RNA 1594

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135071.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC023672
    Related
    ENST00000424355.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    108049200..108052755 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    108510772..108514328 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)