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Stap2 signal transducing adaptor family member 2 [ Mus musculus (house mouse) ]

Gene ID: 106766, updated on 31-Mar-2024

Summary

Official Symbol
Stap2provided by MGI
Official Full Name
signal transducing adaptor family member 2provided by MGI
Primary source
MGI:MGI:2147039
See related
Ensembl:ENSMUSG00000038781 AllianceGenome:MGI:2147039
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
STAP-2
Summary
Predicted to enable signaling adaptor activity. Located in plasma membrane. Orthologous to human STAP2 (signal transducing adaptor family member 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in large intestine adult (RPKM 46.6), duodenum adult (RPKM 34.0) and 19 other tissues See more
Orthologs
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Genomic context

Location:
17 D; 17 29.1 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (56304074..56315558, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (55997074..56008402, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene src homology 2 domain-containing transforming protein D Neighboring gene fibronectin type 3 and SPRY domain-containing protein Neighboring gene STARR-positive B cell enhancer ABC_E2497 Neighboring gene MPN domain containing Neighboring gene bolA-like 3 pseudogene Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:56160654-56160880 Neighboring gene SH3-domain GRB2-like 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables signaling adaptor activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane TAS
Traceable Author Statement
more info
 

General protein information

Preferred Names
signal-transducing adaptor protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001410325.1NP_001397254.1  signal-transducing adaptor protein 2 isoform 1

    Status: VALIDATED

    Source sequence(s)
    CT009719
    UniProtKB/Swiss-Prot
    Q8BWS2, Q8R0L1
    Related
    ENSMUSP00000038130.7, ENSMUST00000043785.8
  2. NM_145934.3NP_666046.1  signal-transducing adaptor protein 2 isoform 1

    See identical proteins and their annotated locations for NP_666046.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the protein.
    Source sequence(s)
    AK050131, AW049765, CT009719
    Consensus CDS
    CCDS28889.1
    UniProtKB/Swiss-Prot
    Q8BWS2, Q8R0L1
    Conserved Domains (2) summary
    cd10404
    Location:151247
    SH2_STAP2; Src homology 2 domain found in Signal-transducing adaptor protein 2 (STAP2)
    cl17171
    Location:9135
    PH-like; Pleckstrin homology-like domain

RNA

  1. NR_102313.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate internal segment, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AK050172, CT009719
    Related
    ENSMUST00000233494.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    56304074..56315558 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036160253.1XP_036016146.1  signal-transducing adaptor protein 2 isoform X2

    Conserved Domains (2) summary
    cd10404
    Location:151247
    SH2_STAP2; Src homology 2 domain found in Signal-transducing adaptor protein 2 (STAP2)
    cl17171
    Location:9135
    PH-like; Pleckstrin homology-like domain