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PCF11-AS1 PCF11 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 106736475, updated on 10-Oct-2023

Summary

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Official Symbol
PCF11-AS1provided by HGNC
Official Full Name
PCF11 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:52263
See related
AllianceGenome:HGNC:52263
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
11q14.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (83185521..83187484, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (83121994..83123957, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (82896563..82898526, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene BCAS2 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5346 Neighboring gene uncharacterized LOC124902726 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3819 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5347 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:82868143-82868932 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3820 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr11:82877478-82878677 Neighboring gene PCF11 cleavage and polyadenylation factor subunit Neighboring gene ANKRD42 divergent transcript Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5349 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5350 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:82904985-82905163 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5351 Neighboring gene ankyrin repeat domain 42 Neighboring gene CDC28 protein kinase regulatory subunit 1B pseudogene 4 Neighboring gene ribosomal protein L32 pseudogene 24

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis. Liu XY, et al. Biomed Res Int, 2015. PMID 26421281, Free PMC Article
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Other Names

  • ENST00000602322.1
  • PCF11 anstisense RNA 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_133914.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000873

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    83185521..83187484 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    83121994..83123957 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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