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B3GNTL1P1 B3GNTL1 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 106481968, updated on 10-Oct-2023

Summary

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Official Symbol
B3GNTL1P1provided by HGNC
Official Full Name
B3GNTL1 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:51317
See related
Ensembl:ENSG00000251237 AllianceGenome:HGNC:51317
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
5q11.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (52889666..52889954)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (53717417..53717712)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (52185498..52185786)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene major facilitator superfamily domain containing 4B pseudogene 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:51940949-51941189 Neighboring gene PELO antisense RNA 1 Neighboring gene NANOG hESC enhancer GRCh37_chr5:52069838-52070355 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22544 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:52095759-52096457 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:52096458-52097157 Neighboring gene integrin subunit alpha 1 Neighboring gene pelota mRNA surveillance and ribosome rescue factor Neighboring gene ribosomal protein L17 pseudogene 21 Neighboring gene ITGA2 antisense RNA 1 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:52283322-52284521 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16003 Neighboring gene integrin subunit alpha 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_045397.1 

    Range
    101..389
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    52889666..52889954
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    53717417..53717712
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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