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RNU4-50P RNA, U4 small nuclear 50, pseudogene [ Homo sapiens (human) ]

Gene ID: 106481871, updated on 10-Oct-2023

Summary

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Official Symbol
RNU4-50Pprovided by HGNC
Official Full Name
RNA, U4 small nuclear 50, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:46986
See related
Ensembl:ENSG00000201231 AllianceGenome:HGNC:46986
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
8q12.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (58814412..58814552, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (59235626..59235766, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (59726971..59727111, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:59581817-59582504 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:59584567-59585254 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:59612775-59613346 Neighboring gene uncharacterized LOC105375858 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27414 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:59684732-59685232 Neighboring gene Sharpr-MPRA regulatory region 1495 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:59754041-59755240 Neighboring gene thymocyte selection associated high mobility group box Neighboring gene VISTA enhancer hs1326 Neighboring gene MPRA-validated peak7040 silencer Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:59967891-59968391 Neighboring gene NANOG hESC enhancer GRCh37_chr8:59971345-59971881 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27415 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:59993837-59994016 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:60021805-60022474 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19220 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19221 Neighboring gene small nucleolar RNA SNORA51 Neighboring gene TOX divergent transcript

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_045888.1 

    Range
    101..241
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    58814412..58814552 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    59235626..59235766 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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