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RNU4-25P RNA, U4 small nuclear 25, pseudogene [ Homo sapiens (human) ]

Gene ID: 106481870, updated on 10-Oct-2023

Summary

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Official Symbol
RNU4-25Pprovided by HGNC
Official Full Name
RNA, U4 small nuclear 25, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:46961
See related
Ensembl:ENSG00000222501 AllianceGenome:HGNC:46961
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
8q24.21
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (128010382..128010611, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (129138233..129138462, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (129022628..129022857, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene Pvt1 oncogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27957 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:129013561-129014142 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27958 Neighboring gene RNA, variant U1 small nuclear 32 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:129037427-129037927 Neighboring gene microRNA 1206 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:129050073-129050724 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:129050725-129051374 Neighboring gene CRISPRi-validated MYC e3 enhancer Neighboring gene CRISPRi-validated MYC e4 enhancer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:129074055-129074702 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:129077402-129078601 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19536 Neighboring gene microRNA 1207 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27959 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:129118718-129119218 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:129121159-129122087 Neighboring gene microRNA 1208

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_044538.1 

    Range
    101..330
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    128010382..128010611 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    129138233..129138462 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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