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COX6CP18 cytochrome c oxidase subunit 6C pseudogene 18 [ Homo sapiens (human) ]

Gene ID: 106481684, updated on 8-Nov-2023

Summary

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Official Symbol
COX6CP18provided by HGNC
Official Full Name
cytochrome c oxidase subunit 6C pseudogene 18provided by HGNC
Primary source
HGNC:HGNC:49370
See related
Ensembl:ENSG00000236041 AllianceGenome:HGNC:49370
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
11p15.5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (2771356..2771577)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (2860723..2860944)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (2792586..2792807)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel subfamily Q member 1 Neighboring gene uncharacterized LOC124902613 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2540941-2541442 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2541443-2541942 Neighboring gene MPRA-validated peak1163 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4305 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:2554792-2554952 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:2556786-2557286 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:2582101-2582884 Neighboring gene Sharpr-MPRA regulatory region 10946 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:2590869-2591089 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2600763-2601368 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3071 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4306 Neighboring gene KCNQ1 opposite strand/antisense transcript 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2706658-2707620 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2709545-2710505 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:2714101-2714968 Neighboring gene nonconserved acetylation island sequence 52 enhancer Neighboring gene ReSE screen-validated silencer GRCh37_chr11:2729441-2729611 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2735134-2735776 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2739659-2740558 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:2741460-2742359 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2745062-2745961 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2744161-2745061 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2746137-2747132 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_21090 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2755915-2756416 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_21101 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2759896-2760754 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2762325-2762961 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2791793-2792456 Neighboring gene uncharacterized LOC124902614 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2818029-2818530 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2821032-2821969 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2826269-2826768 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2832501-2833263 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2833264-2834027 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2848795-2849695 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2856199-2857066 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2857067-2857933 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2878979-2879960 Neighboring gene KCNQ1 antisense RNA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • cytochrome c oxidase subunit VIc pseudogene 18

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_045305.1 

    Range
    101..322
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    2771356..2771577
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187585.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    3543..3764
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    2860723..2860944
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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