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RNU1-88P RNA, U1 small nuclear 88, pseudogene [ Homo sapiens (human) ]

Gene ID: 106481619, updated on 10-Oct-2023

Summary

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Official Symbol
RNU1-88Pprovided by HGNC
Official Full Name
RNA, U1 small nuclear 88, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:48430
See related
Ensembl:ENSG00000238554 AllianceGenome:HGNC:48430
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
6p21.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (36639567..36639672, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (36460209..36460314, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (36607344..36607449, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:36561915-36562596 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:36564442-36564942 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:36564943-36565443 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:36567225-36567726 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:36567727-36568226 Neighboring gene serine and arginine rich splicing factor 3 Neighboring gene MPRA-validated peak5786 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24432 Neighboring gene microRNA 3925 Neighboring gene MPRA-validated peak5787 silencer Neighboring gene uncharacterized LOC105375038 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24433 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:36630075-36630574 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24434 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:36633953-36634734 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:36634735-36635516 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24436 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:36644192-36645391 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17118 Neighboring gene promoter of CDKN1A antisense DNA damage activated RNA Neighboring gene leucine aminopeptidase 3 pseudogene 2 Neighboring gene cyclin dependent kinase inhibitor 1A Neighboring gene damage induced long noncoding RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_044578.1 

    Range
    101..206
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    36639567..36639672 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    36460209..36460314 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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