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RNU1-38P RNA, U1 small nuclear 38, pseudogene [ Homo sapiens (human) ]

Gene ID: 106481608, updated on 10-Oct-2023

Summary

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Official Symbol
RNU1-38Pprovided by HGNC
Official Full Name
RNA, U1 small nuclear 38, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:48380
See related
Ensembl:ENSG00000199687 AllianceGenome:HGNC:48380
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU1-38P in Genome Data Viewer
Location:
2p11.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (85728194..85728337, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (85730042..85730185, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (85955317..85955460, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene NANOG hESC enhancer GRCh37_chr2:85932083-85932584 Neighboring gene granulysin Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:85937820-85938320 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:85938321-85938821 Neighboring gene uncharacterized LOC124907851 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:85977783-85978003 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:85992106-85992689 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:85992690-85993272 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:85993273-85993855 Neighboring gene atonal bHLH transcription factor 8 Neighboring gene Sharpr-MPRA regulatory region 11465 Neighboring gene VISTA enhancer hs1652 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:86003358-86003858 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:86003859-86004359 Neighboring gene microRNA 6071 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:86023815-86024558 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:86031662-86031859 Neighboring gene uncharacterized LOC284950 Neighboring gene RN7SK pseudogene 83

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_044488.1 

    Range
    101..244
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    85728194..85728337 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    85730042..85730185 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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