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RNU6-1009P RNA, U6 small nuclear 1009, pseudogene [ Homo sapiens (human) ]

Gene ID: 106481499, updated on 10-Oct-2023

Summary

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Official Symbol
RNU6-1009Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 1009, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:47972
See related
Ensembl:ENSG00000212298 AllianceGenome:HGNC:47972
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU6-1009P in Genome Data Viewer
Location:
12q14.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (64204793..64204899)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (64183588..64183694)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (64598573..64598679)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene SLIT-ROBO Rho GTPase activating protein 1 Neighboring gene uncharacterized LOC105369801 Neighboring gene Sharpr-MPRA regulatory region 2861 Neighboring gene uncharacterized LOC105369798 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr12:64574933-64576132 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6586 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:64589609-64590204 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:64608983-64609180 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6587 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6588 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:64615884-64616478 Neighboring gene uncharacterized LOC124902952 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6591 Neighboring gene KICSTOR subunit 2 Neighboring gene RNA, U5A small nuclear 7, pseudogene Neighboring gene chromosome 12 open reading frame 56 Neighboring gene OOEP pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_043653.1 

    Range
    101..207
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    64204793..64204899
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    64183588..64183694
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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