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RNU6-885P RNA, U6 small nuclear 885, pseudogene [ Homo sapiens (human) ]

Gene ID: 106481458, updated on 10-Oct-2023

Summary

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Official Symbol
RNU6-885Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 885, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:47848
See related
Ensembl:ENSG00000252416 AllianceGenome:HGNC:47848
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
10q11.21
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (42832447..42832550, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (43709890..43709993, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (43327895..43327998, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378269 Neighboring gene Sharpr-MPRA regulatory region 13348 Neighboring gene uncharacterized LOC283028 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:43264750-43265250 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:43265251-43265751 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3281 Neighboring gene BMS1 ribosome biogenesis factor Neighboring gene small nucleolar RNA U13 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:43311987-43312910 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:43322605-43323486 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:43332057-43333007 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:43361281-43361914 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:43361915-43362548 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:43366313-43366814 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:43366815-43367314 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:43369982-43370710 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:43373919-43374419 Neighboring gene long intergenic non-protein coding RNA 2623 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:43380976-43381476 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:43398966-43399195 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:43430829-43431004 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:43434211-43434711 Neighboring gene VISTA enhancer hs2327 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:43455918-43456418 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:43465538-43466244 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:43469403-43470373 Neighboring gene Sharpr-MPRA regulatory region 9590 Neighboring gene VISTA enhancer hs2497 Neighboring gene long intergenic non-protein coding RNA 1264

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_043331.1 

    Range
    101..204
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    42832447..42832550 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    43709890..43709993 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases