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RNU6-859P RNA, U6 small nuclear 859, pseudogene [ Homo sapiens (human) ]

Gene ID: 106481452, updated on 10-Oct-2023

Summary

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Official Symbol
RNU6-859Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 859, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:47822
See related
Ensembl:ENSG00000199598 AllianceGenome:HGNC:47822
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
21q22.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (43919795..43919901, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (42275412..42275518, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (45339676..45339782, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18552 Neighboring gene CRISPRi-validated cis-regulatory element chr21.1179 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13371 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13372 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13373 Neighboring gene MYL6 pseudogene 1 Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase 3 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:45299777-45299961 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45302099-45302685 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45305625-45306210 Neighboring gene uncharacterized LOC124905034 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18553 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18554 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18555 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45328253-45328754 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45336568-45337118 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45337119-45337668 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13374 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45339493-45340392 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45340393-45341290 Neighboring gene Sharpr-MPRA regulatory region 2423 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:45342191-45343088 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:45344887-45345786 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:45345787-45346684 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45351938-45352438 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45354036-45354854 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18558 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45358304-45359204 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45359205-45360103 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:45360643-45360814 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45363715-45364558 Neighboring gene uncharacterized LOC105372826 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45376043-45376543 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45401087-45401848 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45401849-45402610 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:45402611-45403372 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13375 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:45405825-45406355 Neighboring gene uncharacterized LOC105372829 Neighboring gene RNA, U6 small nuclear 1150, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_043283.1 

    Range
    101..207
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    43919795..43919901 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    42275412..42275518 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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