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RNU6-642P RNA, U6 small nuclear 642, pseudogene [ Homo sapiens (human) ]

Gene ID: 106481384, updated on 10-Oct-2023

Summary

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Official Symbol
RNU6-642Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 642, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:47605
See related
Ensembl:ENSG00000200029 AllianceGenome:HGNC:47605
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU6-642P in Genome Data Viewer
Location:
2q35
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (218916184..218916287, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (219404554..219404657, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (219780906..219781009, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene Wnt family member 6 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12328 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12329 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12330 Neighboring gene Wnt family member 10A Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12331 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12332 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12333 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12334 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17131 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:219757282-219757864 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17134 Neighboring gene uncharacterized LOC105373882 Neighboring gene Sharpr-MPRA regulatory region 8081 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17135 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12336 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12337 Neighboring gene long intergenic non-protein coding RNA 1494 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17136 Neighboring gene uncharacterized LOC124906119 Neighboring gene uncharacterized LOC124907984 Neighboring gene keratin 8 pseudogene 30

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_045194.1 

    Range
    101..204
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    218916184..218916287 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    219404554..219404657 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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