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RNU6-623P RNA, U6 small nuclear 623, pseudogene [ Homo sapiens (human) ]

Gene ID: 106481378, updated on 10-Oct-2023

Summary

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Official Symbol
RNU6-623Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 623, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:47586
See related
Ensembl:ENSG00000200013 AllianceGenome:HGNC:47586
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU6-623P in Genome Data Viewer
Location:
17q23.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (60662333..60662437, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (61531157..61531261, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (58739694..58739798, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene splicing factor 3B subunit 6-like Neighboring gene amyloid beta precursor protein binding protein 2 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:58602514-58603222 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8794 Neighboring gene MPRA-validated peak2927 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr17:58656843-58657505 Neighboring gene MPRA-validated peak2928 silencer Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:58677476-58678463 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:58676487-58677475 Neighboring gene long intergenic non-protein coding RNA 1999 Neighboring gene MPRA-validated peak2930 silencer Neighboring gene ribosomal protein SA pseudogene 66 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8795 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:58754592-58755345 Neighboring gene MPRA-validated peak2931 silencer Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1D Neighboring gene ReSE screen-validated silencer GRCh37_chr17:58784318-58784508 Neighboring gene RNA, 7SL, cytoplasmic 606, pseudogene Neighboring gene ribosomal protein L36a pseudogene 46 Neighboring gene BCAS3 microtubule associated cell migration factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_044695.1 

    Range
    101..205
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    60662333..60662437 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    61531157..61531261 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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