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RNU6-386P RNA, U6 small nuclear 386, pseudogene [ Homo sapiens (human) ]

Gene ID: 106481300, updated on 10-Oct-2023

Summary

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Official Symbol
RNU6-386Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 386, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:47349
See related
Ensembl:ENSG00000199520 AllianceGenome:HGNC:47349
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
3p12.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (77092057..77092163)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (77146012..77146118)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (77141208..77141314)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene roundabout guidance receptor 2 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:76518793-76519992 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:76546619-76547252 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71246 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71286 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20106 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:76600516-76601016 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:76601017-76601517 Neighboring gene CAP1 pseudogene 1 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71345 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71357 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71361 Neighboring gene MPRA-validated peak4710 silencer Neighboring gene uncharacterized LOC102724949 Neighboring gene MPRA-validated peak4713 silencer Neighboring gene MPRA-validated peak4717 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:77039649-77040150 Neighboring gene MPRA-validated peak4719 silencer Neighboring gene MPRA-validated peak4720 silencer Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:77214086-77214814 Neighboring gene MPRA-validated peak4724 silencer Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:77359951-77361150 Neighboring gene voltage dependent anion channel 1 pseudogene 7 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:77524547-77525070 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:77582237-77583436 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:77623115-77624314 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:77735685-77736226 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:77844088-77844666 Neighboring gene RNA, U6 small nuclear 217, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_045699.1 

    Range
    101..207
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    77092057..77092163
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    77146012..77146118
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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